PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009662.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 348aa    MW: 38951.7 Da    PI: 10.5075
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009662.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.5e-31282340259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh 
  Aco009662.1 282 ADEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDEPSMLIVTYEGEHNHG 340
                  69*************************988****************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-17234279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.9E-34269340IPR003657WRKY domain
PROSITE profilePS5081129.7276339IPR003657WRKY domain
SuperFamilySSF1182907.19E-27279340IPR003657WRKY domain
SMARTSM007744.7E-38281341IPR003657WRKY domain
PfamPF031066.3E-27283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEEVEEATRA AVERSHRVLN LLSQSQDQLL PYRNLRAETE EAVSRFRRVA SLLGNDGVVG  60
HARVRRVKNP LPSFNHKLFL ESPMPSRPIP SPMPLQLLPR NSVENPVKEL VPTAKFPSQR  120
MYLLENPSVL EMAPPVAHRL HLNQMFQLEQ QQQQQQQQKR LQSEMLRRSN SGINIKFDSS  180
NCTVATASSS KSFLSSLSMD GSIASLDGKP FQTPFQLISG SQSSNTMDMH LPPKRRCLGK  240
GQDGSGRCAS GAKCHCSKKR KLRVKRSIKV PAISNKLADI PADEYSWRKY GQKPIKGSPH  300
PRGYYKCSSV RGCPARKHVE RCVDEPSMLI VTYEGEHNHG KLLNQPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20274339771WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802836.11e-147PREDICTED: protein WRKY1-like isoform X1
SwissprotQ32SG41e-115WRKY1_MAIZE; Protein WRKY1
TrEMBLM0U2B51e-125M0U2B5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P21560_0011e-124(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.15e-76WRKY DNA-binding protein 39